Template-based predictor of RNA secondary structure. It takes a template RNA secondary structure(s) and a query RNA sequence(s) and generates secondary structure of the query sequence(s) using the provided structure(s) as a template(s). Biological reliability of the generated structures is evaluated in form of z-scores.
Curare is a free analysis pipeline for reproducible, high-throughput, bacterial RNA-Seq experiments. Define standardized pipelines customised for your specific workflow, without installing all the tools by yourself.
DoGSite is a grid-based method which uses a Difference of Gaussian filter to detect potential protein binding pockets - solely based on the 3D structure of the macromolecules.
A bioinformatics tool for hypothesis generation and prioritization of drugs capable of modulating immune cell activity from transcriptomics data.
DSW@IFB is the support service for the development of data management plans in life sciences hosted by the French Bioinformatics Institute (IFB / ELIXIR-FR) and based an instance of the Data Stewardship Wizard<https://ds-wizard.org/>.
Easily interpretable electron density score for individual atoms.
An API aiming to enable the search of genomic variants and associated information without jeopardising the privacy of the dataset.
EnzymeMiner identifies putative members of enzyme families or subfamilies and facilitates the selection of promising targets for experimental characterization. Two key selection criteria are (i) the predicted solubility and (ii) the sequence identities visualised using an interactive sequence similarity network. The search query can be a sequence from the Swiss-Prot database or a custom sequence with a custom description of essential residues. The output is an interactive selection table containing annotated identified sequences.
eggNOG is a database of nested orthologous gene groups (NOGs) infered using unsupervised clustering applied to >2,000 complete genomes followed by comprehensive characterization and analysis of the resulting gene families. eggNOG provides orthologous group assignments at >100 different taxonomic levels as well as multiple sequence alignments, maximum-likelihood trees and broad functional annotations for each group accessible via a web interface or through bulk download. Part of the Microbiome Analysis Toolbox.
FAIR-Checker is a generic tool built on semantic web W3C standards and technologies that aims at assessing the alignement to FAIR principles of web resources, in line with the GO-FAIR and RDA FAIR data maturity model.