Methylation-Aware Genotype Association in R (MAGAR) computes methQTL from DNA methylation and genotyping data from matched samples. 

Multivariate Asymptotic Non-Parametric Test of Association

Parallel and scalable workflow for the analysis of Oxford Nanopore direct RNA sequencing datasets. Nextflow pipeline for analysis of Nanopore reads (from RNA/cDNA/DNA).

MeDeCom is an R package for reference-free decomposition of heterogeneous DNA methylation profiles. 

Server that performs functional enrichment analysis of a list of chemical compounds derived from a metabolomics experiment, which allows this list to be interpreted in biological terms.

METALizer predicts the coordination geometry of metals in metalloproteins.

MetaProteomeAnalyzer is an intuitive open-source tool for metaproteomics data analysis and interpretation, which includes multiple search engines and the ability to decrease data redundancy by grouping protein hits into so-called metaproteins. 

methview.qc allows you to generate quality control plots from your methylation array dataset.

MicroMiner searches mutations in protein structure databases like the PDB. Retrieved mutant structures can be easily analysed and compared. 

Nucleic acid search engine to reliably identify a wide range of modified RNA sequences.