Software for Spot-based Spatial cell-type Analysis by Multidimensional mRNA density estimation.

 SSAM-lite is a lightweight, browser-based implementation of the SSAM framework. It provides the functionality of SSAMs most popular and widely used features in a graphical user interface with a few functions added for convenience and ease of use. It can be run on a modest laptop.

StructureProfiler is a tool to screen structures based on selection criteria typically used upon dataset assembly for structure-based design methods.

A multiple sequence alignment package that can be used for DNA, RNA and protein sequences. It can be used to align sequences or to combine the output of other alignment methods (Clustal, Mafft, Probcons, Muscle...) into one unique alignment.

UseGalaxy.fr is the national Galaxy instance for ELIXIR-FR and deployed on the IFB Core Cluster and enabling reproducible analysis for french and international researchers in different domains: genomics, metagenomics, metabolomics, proteomics, ecology.

WarPP is a fully automated procedure to place water molecules in the active site of a protein structure. 

A web-accessible, single cell RNA-Seq processing platform designed for the management, analysis and interpretation of scRNA-seq high-throughput data.

WESkit is an open source implementation of a Workflow Execution Service (WES). It tries to be GA4GH-compliant.

Workflow Execution Service automating a number of steps, including: 

1. Fetch and cache a workflow a number of sources
2. Identify the kind of workflow.
3. Fetch and set up workflow execution engine
4. Identify the needed containers by the workflow
5. Execute the workflow in a secure way

Workflow plugins provide pipelines for the most common NGS processing tasks, including alignment (WES, WGS, WGBS, RNA-seq), quality control and variant calling (SNV, indel, CNV, SV).