| Single-Cell Omics Network for ELIXIR (SCONE) (2023–24) |
Single-Cell Omics |
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| ELIXIR LEadership And Diversity mentoring programme - ELEAD Pilot |
|
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| Scalable Curation of TF-TG interactions via Integration of NLP and VSM (2022-23) |
Data |
|
| Packaging, containerisation and deployment |
Tools, Workflows, Galaxy |
|
| Software Best Practices |
Tools |
|
| Rare Diseases Infrastructure |
Rare Diseases |
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| Beacon (2019-21) |
Federated Human Data |
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| Increasing Interoperability between ELIXIR Protein Structure and Sequence Resources and Expanding these Resources with 3D-Models of CATH Domains, built by SWISS-MODEL |
Data, Interoperability, Federated Human Data, 3D-BioInfo |
|
| Mapping the landscape of Biocuration in ELIXIR: Practice, capability and training requirements |
Training, Data, Interoperability |
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| Integrating ELIXIR Italy into ELIXIR activities |
Data, Federated Human Data, Rare Disease, Interoperability, Tools, Marine Metagenomics |
|
| Using clouds and VMs for bioinformatics training |
Training, Compute, Galaxy |
|
| ELIXIR proof of concept study on the availability of big datasets on remote compute infrastructure |
Compute, Training, Galaxy |
|
| 2015-2016 Beacon project |
|
|
| 3D-BioInfo Community Implementation Study |
3D-BioInfo |
|
| A framework to standardize Machine Learning in Life Sciences (2023-24) |
Tools |
|
| A microbial metabolism resource for Systems Biology |
Data, Microbial Biotechnology |
|
| A Scalable approach to Personal FAIR Data Management and Analysis |
Compute, Interoperability, Galaxy |
|
| AAI engagement (2022-23) |
Compute |
|
| AAI production |
Compute |
|
| Administration and support for Core Data Resource (CDR), Deposition Database (EDD) portfolio and Community Data Resources (2022-23) |
Data |
|
| Alignment of the Interoperability Platform FAIR Service Architecture Framework with the Data Platform, Communities, and ELIXIR Projects (2022-23) |
Interoperability |
|
| An ELIXIR Interoperability Platform Knowledge Hub (2022-23) |
Interoperability |
|
| Annotating ELIXIR services for Registry inclusion |
Tools |
|
| Annotation and curation of human genomic variations (2018-Variations) |
Compute, Data, Interoperability |
|
| APICURON integration with curation databases (2022-23) |
Data |
|
| Apple as a Model for Genomic Information Exchange |
Data, Plant Sciences |
|
| Architecture for Software Containers at ELIXIR and its use by EXCELERATE Use Case Communities |
Tools, Compute, Training, Rare Diseases |
|
| Beacon (2019-21) |
|
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| Beacon and Beacon Network as a Service |
|
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| Beacon and beyond — Implementation-driven standards and protocols for CNV discovery and data exchange |
Human Copy Number Variation (hCNV) |
|