Gear is a genome analysis web server hosting applications for molecular biologists to analyze Sanger traces, design PCR primers and perform DNA sequence analyses. All code is open-source and freely available in the GEAR software repositories, including the code for the web server front-end applications and the backend genomics analysis software. Among other command-line applications, the backend code includes Tracy.

GenExVis (Gene Expression Visualizer) is a desktop application for exploring and visualizing differential gene expression data. 

GeoMine enables textual, numerical and 3D searching with full chemical awareness in binding sites of the entire PDB dataset. 

A versatile software package for pan-genome analysis, including GET_HOMOLOGUES and GET_HOMOLOGUES-EST

Enables you to set up and train models for ab initio prediction of gene structure. That is, to perform "gene calling" and identify which base pairs in a genome belong to the UTR/CDS/Intron of genes.

A web tool for the interpretation of the consequences of the combined changes of gene expression levels and/or genomic mutations in the context of signalling pathways. 

HyPPI classifies a protein-protein complex concerning its interaction type into a permanent, transient or crystal artifact. 

Web tool to study the flexibility of nucleic acids, either isolated or bound to other molecules. The server offers a variety of methods to explore nucleic acid flexibility, from coarse-grained low resolution mesoscopic models to atomistic molecular dynamics simulations.

A web service for the structural annotation of protein-protein interaction networks. 

JAMDA docks small molecules into protein binding sites.