Weekly Brief, 20 May 2024

This week's highlights

ELIXIR Gateway on F1000Research: Advisory Board expansion

F1000 spoke to members of the ELIXIR Gateway Advisory Board to talk about their background and motivations, their views on open research, and where they hope to see the Gateway go in the future.

Read the blog post

Recommended reads

Best practices for the manual curation of intrinsically disordered proteins in DisProt

An ELIXIR IDP Community paper


The DisProt database is a resource containing manually curated data on experimentally validated intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) from the literature. This guideline aims to provide both biocurators and external users with best practices for manually curating IDPs and IDRs in DisProt. It describes every step of the literature curation process and provides use cases of IDP curation within DisProt.

Read more

Building Towards a Machine-Actionable Software Management Plan

A BioHackathon Europe 2023 Report


This report provides an overview of our activities and accomplishments concerning machine-actionable Software Management Plans (SMPs) and the Software Management Wizard (SMW) during the ELIXIR BioHackathon Europe 2023. The outcomes of the BioHackathon project are now available for immediate use and can be further refined in the future based on community feedback and advancements in research software best practices.


Read more

Updates from Nodes

Finnish Use Cases 2 report

Finnish Use Cases 2 report presents a range of Finnish biomedical research that has benefited from the resources of ELIXIR.

Read the report

3rd BioHackathon Germany: Get-to-Know event

29 May 2024 | 14:00 - 15:00 CEST | Online

Get-to-Know Event for the BioHackathon Germany 2024 provides an opportunity for all to meet and mingle before the hackathon officially kicks off.

More information and registration

BioSB PhD retreat 2024

17 June 2024 | Egmont aan Zee, the Netherlands


ISCB Regional Student Group Netherlands (YoungCB) is organising the BioSB PhD retreat 2024 on June 17, preceding the BioSB conference. The event provides a chance to network with peers and will dive into the world of green and efficient data science.

More information and registration

New e-learning course: Identifiers in Bioinformatics


Check the new SIB e-learning course Identifiers in Bioinformatics to learn what is an identifier, common identifiers in bioinformatics, how to find identifiers using different tools and why their use is critical to interoperability.

More information

Updates from Focus Groups

Low-impact travel suggestions to ELIXIR All Hands and ECCB 2024

Train or ferry to Uppsala and Turku

The Environmental Impact Focus Group researched the options and compiled concrete travel itinerary suggestions for a low-carbon trip to the All Hands in Uppsala and ECCB 2024 in Turku.

Link to the document

Updates from other initiatives

CoARA Boost cascade funding open call

Deadline: 26 June 2024


The call for Cascade Funding within CoARA Boost aims to enhance institutional change and target pilot and exchange-of-knowledge initiatives. This first call will fund over 20 projects facilitating knowledge exchange, piloting new initiatives within institutions, and enabling lasting institutional change.

More information

EOSC Symposium 2024

21 - 23 October 2024 | Berlin, Germany
Poster abstract deadline: 2 June 2024


The EOSC Symposium 2024 is a key event to network and exchange ideas with policy makers, funders, and representatives of research institutions, research communities, and data- and e-Infrastructures active in the EOSC ecosystem. The submission for poster abstracts is now open.

More information

Qualitative data for AI & ML: insights from AstraZeneca, ELIXIR and ONTOFORCE

23 May 2024 | 16:00 - 17:00 CEST | Online

Join an engaging webinar on the significance of harmonised data in advancing AI and ML applications within life sciences. Hosted by industry experts from AstraZeneca, ELIXIR and ONTOFORCE, this webinar will unveil the transformative power of clean data in driving innovation, enhancing predictive analytics, and informing critical decision-making processes.

More information and registration

Upcoming ELIXIR events & webinars

ELIXIR Training Courses & Webinars

The ELIXIR TeSS portal has a variety of interesting events and courses organised by the ELIXIR Nodes. For more, visit TeSS portal

FAIR-ification of Toxicological Research Output: Leveraging ELIXIR Resource
28 - 29 May | Utrecht, Netherlands


SIB course: Submitting, Finding and Downloading Raw Sequencing Data with ENA
7 June 2024 | Online

How to use Artificial Intelligence in Nutrition Research
13 June 2024 |15:00-16:00 CEST | Online

Computational Pangenomics
19-21 June 2024 | Rome, Italy

SIB course: Enrichment Analysis
28 June 2024, Streamed


Train-the-Trainer course
3-5 July 2024 | Esch-sur-Alzette, Luxembourg

EMBL-EBI: Managing a bioinformatics core facility
29-31 October 2024 | EMBL-EBI, UK

ELIXIR Events and Conferences


ELIXIR All Hands 2024
10-12 June 2024 | Uppsala, Sweden

ECCB 2024
16-20 September 2024 | Turku, Finland

ELIXIR Data Platform F2F 2024
1 October 2024 | Padova, Italy


BioHackathon Europe 2024
4 - 8 November 2024 | Barcelona, Spain

Job vacancies

All vacancies are also published on the ELIXIR website (also including those from industry). If you need our help communicating your new open positions, you can submit a job advertisement and it will automatically appear on our newsletters. Go to our vacancy page to submit a job
 

Group Leader (rank Director)

SIB Swiss Institute of Bioinformatics

Systems Engineer / DevOps Engineer (m/f/d)

European Galaxy Team, Department of Computer Science, University of Freiburg

Senior Engineer/ Chief Engineer (System Developer)

University of Bergen

Biocurator / Senior Biocurator

Cardiff University

Data Scientist

UPF