A reusable platform-independent API call component for protein metadata alignment, annotation, and integration across major protein data resources.

ANISEED is the main model organism database for the worldwide community of scientists working on a class of marine invertebrates, the tunicates (sister-group of vertebrates). It integrates for each species: a main knowledge base with extended information on gene function, gene expression, phylogeny and embryonic anatomy at single cell resolution; a genomic browser and a Genomicus gene synteny browser.

A tailored extension of Schema.org specifically for the Life Science domain, supported by collaborative communities.

 BIII Bio Image informatics Index (www.biii.eu) is a knowledge database of software tools, test image databases and training materials for bio image analysis. Software tools are organized as full protocol of analysis (workflow), specific brick (component) to construct a workflow, or software platform or library (collection).  They are described using Edam Bio Imaging, which is iteratively defined using this website. All entries are exposed following FAIR principles and accessible for other usage with  (ODC-By) v1.0 license.

A framework to map identifiers between various databases.

ELIXIR-NL can help organise standard events that make data sources more FAIR by applying Linked Data, or help make data repository software more FAIR. Such meetings focus on one or two data sources, and will bring together your experts on the data content and on the usage of the data with experts in data modeling. As an important side-effect such events also educate the participants on what it means to make data FAIR in practice.

Conceptual modelling, especially OntoUML, UML, BORM, DEMO and BPMN and consultancy. Software solutions design, software development and consultancy.

Expertise on very diverse subjects of data processing, analysis and curation as well as connections to existing infrastructure RI's like EUDAT. This expertise can be made available to research projects and organisations.  

An API SPARQL Endpoint for genetic variants (human disease data).

Electronic Data Archive Library is a lightweight software framework for publishing and sharing research data

Data publication technology/tooling based on Linked Data, with associated data management processes. See the FAIR data tools.

Open source web platform for sharing scientific research assets, models, processes and outcomes. Offering the FAIRDOMHub instance, as well as the SEEK software for own installations. Associated tooling and training.

The SEEK platform is a web-based resource for sharing heterogeneous scientific research datasets, models or simulations, processes and research outcomes. 

An information and educational resource of inter-related data standards, databases and policies. 

g:Profiler is a bioinformatics toolkit for characterising and manipulating gene lists of high-throughput genomic data.

The Gene Ontology (GO) project addresses the need for consistent descriptions of gene products across databases. It has developed three structured, controlled vocabularies (ontologies) that describe gene products.

HUGO Gene Nomenclature Committee, responsible for approving unique symbols and names for human loci, including protein coding genes, ncRNA genes and pseudogenes, to allow unambiguous scientific communication.

Identifiers.org is a system providing resolvable persistent URIs used to identify data for the scientific community, with a current focus on the Life Sciences domain.

An integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), and major histocompatibility (MH) of human and other vertebrate species. 

A database framework widely used to support model organism databases. 

A suite of open source tools and formats to enable standards-compliant collection, curation, management, publication and reuse of experiments. 

A web tool and a mobile app for exploring the entire Tree of Life

Provides access to lipid nomenclature, databases, tools, protocols, standards, tutorials, meetings, publications, and other resources and serving the international lipid research community.

A software package to help researchers set up an online database application that supports data queries and allows data sharing.

Terms that are commonly encountered while conducting, reporting, storing, harmonizing, integrating, and describing nutritional studies. ONS builds upon a subset of the Ontology for Biomedical Investigations (OBI), reuses already formalized information by importing terms already defined in other ontologies, and defines de novo key classes/terms to tailor concept to the nutritional field

Orphadata provides the scientific community with comprehensive, quality data sets related to rare diseases and orphan drugs from the Orphanet knowledge base, in reusable formats.

Orphanet is the reference resource for information and data on rare diseases and orphan drugs. Orphanet derives from its knowledge base an ontology of rare diseases, information on rare diseases and data on rare diseases.

A service for the publishing, archiving and re-using data.

ParameciumDB is a community model organism database for the ciliate Paramecium. The web site gives access to genomes of many Paramecium species and their annotations. ParameciumDB also  integrates  genome-wide datasets (DNA-seq, RNA-seq, ChIP-seq) provided by the community. This portal is used to query, retrieve, visualize and compare the most up-to-date public data.

A comprehensive ontology for the plant domain, that is useful for data integration and querying heterogeneous data.