Service list
Name of service | Description | Related links* |
---|---|---|
3DBIONOTES API |
A reusable platform-independent API call component for protein metadata alignment, annotation, and integration across major protein data resources. |
bio.tools |
AAI - REMS |
CSC develops and hosts an open source tool REMS to assist a DAC to manage Data Access Applications and access rights to sensitive datasets. REMS is a key component in ELIXIR AAI. |
TeSS |
ACT |
Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. |
bio.tools |
Alfred |
Alfred is a comprehensive NGS alignment quality control method that supports commonly used QC metrics, RNA and DNA feature counting and flexible feature annotation. |
bio.tools |
AmtDB |
This is the place where you can find an updated list of the published mitochondrial sequences coming from the ancient DNA samples (aDNA). The main interest of our database lies in the anatomically modern Homo sapiens samples, ranging from the late Paleolithic to roughly Iron Age times, focusing on an Euroasian geographical area. We provide both the mtDNA sequences (in FASTA format), and the metadata for the samples (IDs, dates, geolocation, site, culture, mtDNA haplogroup etc., available to download in a tab-delimited text file). |
bio.tools |
AMYL-PRED 2 |
A Consensus Method for Amyloid Propensity Prediction |
bio.tools |
ANASTASIA |
ANASTASIA (Automated Nucleotide Animoacid Sequences Translational plAtform for Synthetic Interpretation and Analysis) is a metagenomics analysis platform and repository. |
bio.tools |
ANISEED |
ANISEED is the main model organism database for the worldwide community of scientists working on a class of marine invertebrates, the tunicates (sister-group of vertebrates). It integrates for each species: a main knowledge base with extended information on gene function, gene expression, phylogeny and embryonic anatomy at single cell resolution; a genomic browser and a Genomicus gene synteny browser. |
bio.toolsFAIRsharing |
APICURON |
APICURON is a database to credit and acknowledge the work of biocurators. It collects and aggregates biocuration events from third party resources generating achievements and leaderboards. |
bio.toolsFAIRsharing |
APPRIS |
Annotates variants with biological data such as protein structural information, functionally important residues, conservation of functional domains and evidence of cross-species conservation. |
bio.tools |
Argot |
Annotation Retrieval of Gene Ontology Terms using semantic similarity in Gene Ontology. |
bio.tools |
ARIA |
ARIA (Ambiguous Restraints for Iterative Assignment) is a software for automated NOE assignment and NMR structure calculation. It speeds up and automatizes the assignment process through the use of an iterative structure calculation scheme. |
bio.tools |
ARIES |
A customised Galaxy instance for the genomic characterisation of microoganisms in particular and data intensive biomedical research in general. |
bio.tools |
ArrayExpress |
ArrayExpress is a MIAME-standard compliant resource that stores functional genomics experiments performed using RNA-Seq/ChIP-Seq and array-based technologies. |
bio.toolsFAIRsharingTeSS |
ASA3P |
Automated high-throughput assembly, annotation and feature analysis of microbial genome cohorts |
bio.tools |
ASAP |
ASAP (Automated Single-cell Analysis Portal) is a web-based, collaborative portal aimed at democratizing single-cell omics data analyses and to render it more accessible to researchers. ASAP does not require any installation and enables standardized analyses that can be run in minutes by any user without requiring significant computing power. The entire single-cell analysis pipeline is available in ASAP, allowing users to choose from a panel of tools, and guiding them through tutorials. |
bio.tools |
AspicDB |
Alternative splicing database of human genes and functional annotation of their isoforms using the ASPic algorithm. |
bio.tools |
Atomic Charge Calculator |
Atomic Charge Calculator - web application using the Electronegativity Equalization Method. |
bio.tools |
AuReMe |
AuReMe, is an adaptable workspace for sustainable reconstructions or improvements of genome-scale metabolic models involving personalized pipelines. It is adapted to the metabolic study of non-conventional organisms and microbiomes to ensure that the process is reproducible and documented regardless of the combination of tools used. Among others, modules included in the AuReMe environment are a model-management PADmet module, a wiki-export module, a gap-filling tool for non-conventional organism (meneco), a tool for the reduction of microbial communities based on metabolic complementarities (miscoto) and a package to handle the analysis of large-scale microbiota (Metage2Metabo). |
bio.tools |
Authentication and Authorization Infrastructure (AAI) |
The ELIXIR AAI (Authentication and Authorisation Infrastructure) is the ELIXIR service portfolio for authenticating users and helping relying services to manage users' access rights in the services. |
TeSS |
Babelomics |
An integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. |
bio.tools |
BacDive |
BacDive represents a collection of organism-linked information covering the multifarious aspects of bacterial and archaeal biodiversity. The content encloses information on taxonomy, morphology, physiology, sampling and environmental conditions as well as molecular biology. |
bio.toolsFAIRsharing |
BaCelLo |
Predicts the subcellular localization of proteins in eukaryotes. |
bio.tools |
BEGDB |
Benchmark Energy and geometry DataBase is available through web interface with integrated analytical tools. |
bio.toolsFAIRsharing |
Berlin RNA Toolbox |
Online access to tools and databases related to miRNAs binding site predictions, RNA Binding protein binding sites, circular RNAs, CLIP data analysis and transcriptome analysis |
|
Bgee |
Database to retrieve and compare gene expression patterns between animal species. |
bio.toolsFAIRsharing |
bio.tools |
Web portal for tools registry and discovery, incorporating tool benchmarking and service monitoring information and the use of EDAM for precise scientific tool description. |
bio.tools |
Bio2Byte SARS-CoV-2 |
Website providing sequence-based predictions to grasp the behaviour of proteins that compose the SARS-CoV-2 virus |
|
BioConda & BioContainers |
Build, test and convert Cloud and HPC software into Linux containers. |
bio.tools |
BiocWorkflowTools |
This bioconductor authoring tool links the journal’s manuscript management system with the Bioconductor nightly build system, thus enabling “continuous Integration”, automated quality control and guaranteed workflow functionality even as underlying resources and tools evolve. A package and tutorial publication are underway, and we have actively helped several authors from the community with workflow authoring. |
bio.tools |