Service list

GnpIS is an interoperable Information System for plant and pest genomics. It is a powerful multispecies centralized information system with seven linked relational databases. 

The UniProt  GO annotation program (GOA) aims to provide high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB).

Detection of distinct Galpha families, Gbeta and Ggamma subunits of heterotrimeric G-proteins using profile Hidden Markov Models (pHMMs).

GraphWeb is a public web server for graph-based analysis of biological networks.

gtrellis is an R package which facilitates genome-level trellis layout, for enhancing visualisation and graphical layout

The GTPB runs face-to-face Bioinformatics Training Courses regularly at the Instituto Gulbenkian de Ciência.

The NHGRI-EBI GWAS Catalog is a quality-controlled, manually curated, literature-derived collection of all published genome-wide association studies.
 

Providing a centralized compilation of summary level findings from genetic association studies, both large and small

HAMAP is a system for the classification and functional annotation of protein sequences. It consists of a collection of expert curated family profiles for protein classification and associated rules for protein annotation. 

Performs haplotype assembly from long gapless reads.

A specialized and medically-oriented database of published variations observed within the internal ribosome entry site (IRES) variants in hepatitis C virus.

Enables you to set up and train models for ab initio prediction of gene structure. That is, to perform "gene calling" and identify which base pairs in a genome belong to the UTR/CDS/Intron of genes.

Under Development in collaboration with SURFsara and Lygature, based on prior experience deploying tools for end users / life scientists.

Human Endogenous RetroViruses Database.

HUGO Gene Nomenclature Committee, responsible for approving unique symbols and names for human loci, including protein coding genes, ncRNA genes and pseudogenes, to allow unambiguous scientific communication.

HilbertCurve is an R package which generates 2D Hilbert curves for genomic and other data

A web tool for the interpretation of the consequences of the combined changes of gene expression levels and/or genomic mutations in the context of signalling pathways. 

The HLA Ligand Atlas is a comprehensive collection of tissue and HLA allele specific HLA ligands that are naturally presented. The data was generated in standardized mass spectrometry experiments and analyzed using our reproducible computational analysis workflow. (Data analysed with the OpenMS MHCquant workflow) 

Estimation of transmembrane regions based on amino acid sequence

Database of human mitochondrial genomes from primary INSDC databases, personal submissions and application of MtoolBox to NGS data.

Web server for identification of hot spots in protein engineering.

Tier-0 HPC system Marconi and Tier-1 Galileo100 INFN HPC clusters ENEA CRESCO "HPC service”

Fast-track HPC access for medium sized biological data analysis projects (50K core hours).

Human transmembrane proteome database

A collection of web resources for working with proteins, drug reactions, gene expression analysis, proteome profiling and assessing MinION Data, including: 

• DeSeq2 - an R/Bioconductor package for differential expression analysis of high-throughput sequencing assays
• DexSeq - an extension of DESeq for the analysis of alternative exon usage.
• EBImage - R/Bioconductor package that provides general purpose functionality for the reading, writing, processing and analysis of images.
• SMART - a web resource providing simple identification and extensive annotation of protein domains via sequence homology searches.
• SIDER - a web-based resource that contains information on marketed medicines and their recorded adverse drug reactions.

Database with millions of high-resolution images.

A population-based database that collects all the cases with malignancies in Hungary by reports of oncology care hospitals. Registration is mandatory. The Registry is regulated by the order of the Hungarian Government and maintained by the  National Institute of Oncology.

HyPPI classifies a protein-protein complex concerning its interaction type into a permanent, transient or crystal artifact. 

Predicts protein stability changes upon single point mutation from protein structure or protein sequence.

Identifiers.org is a system providing resolvable persistent URIs used to identify data for the scientific community, with a current focus on the Life Sciences domain.