Services

Name of service Tag ELIXIR Node Related links* Key Collection
Rhea

Rhea is a comprehensive and non-redundant resource of expert-curated biochemical reactions described using species from the ChEBI (Chemical Entities of Biological Interest) ontology of small molecules. 

ELIXIR Switzerland CDD
SABIO-RK

Web interface accessing a curated database with information about biochemical reactions and kinetic properties in an experimental or environmental context.

ELIXIR Germany
SIGNOR

The SIGnaling Network Open Resource annotates signaling information from the literature as binary causative relationships.

ELIXIR Italy
STRING

STRING is a database of known and predicted protein-protein interactions. The database contains information from numerous sources, including experimental repositories, computational prediction methods and public text collections. 

ELIXIR Switzerland CDD
SulfAtlas

SulfAtlas is a knowledge-based database which (i) helps to better annotate sulfatases in (meta)genomic data and notably to improve the prediction of substrate specificities; (ii) guides the experimental biologists to select target sulfatases which remain to be characterized in term of function and structure. The data contained in SulfAtlas is curated by experts, based on our phylogeny-based classification system and on literature.

ELIXIR France
The B6 database

Contains tools for the functional classification of PLP-dependent enzymes in predicted protein sequences.

ELIXIR Italy
UniProtKB

UniProt produces and maintains automatic and manually curated annotation of all publicly available protein sequences and serves these to users through various interfaces. 

ELIXIR Switzerland, EMBL-EBI CDD
WikiPathways

An open, collaborative platform dedicated to the curation of biological pathways

ELIXIR Netherlands