ELIXIR Germany

As national ELIXIR node, ELIXIR Germany includes 23 contractual partners from German universities and research institutions as well as the associated EMBL Heidelberg. Since Germany became a member of ELIXIR in August 2016, the contracting parties have set up the German ELIXIR node on behalf of the Federal Ministry of Education and Research (BMBF) with the aim of providing bioinformatics services, training and cloud computing for research in the life sciences and coordinating further scientifical developments of the German node closely connected with ELIXIR Europe.

ELIXIR Germany bundles expertise and national resources in the form of eight thematically different service units: human bioinformatics, plant bioinformatics, microbial bioinformatics, RNA bioinformatics, bioinformatics for proteomics, integrative bioinformatics, bioinformatics for systems biology and bio databases. The latter service unit also operates the three German ELIXIR Core Data Resources BRENDA, SILVA and BacDive. Additionally, the node houses Galaxy, an ELIXIR Recommended Interoperability Resource. The service offering of the German ELIXIR node is listed at the bottom of this website with the relevant links. In addition, the German ELIXIR node has established an extensive and diverse training program for the services offered over the past few years, as well as a large cloud system to support its services and its users with the needed hardware resources.

ELIXIR Germany is coordinated by Forschungszentrum Jülich as the representing entity.

German members of the ELIXIR Board

Rolf Backofen
Rolf Backofen
(University of Freiburg)
Alexander Goesmann
Alexander Goesmann
(Justus-Liebig-Universität Gießen)

Joint Head of Node

Oliver Kohlbacher
Oliver Kohlbacher
(Eberhard Karls Universität Tübingen)

Joint Head of Node

Alexander Sczyrba
Alexander Sczyrba
(Forschungszentrum Jülich)

Deputy Head of Node, Node Coordinator

Irena Maus
Irena Maus
(Forschungszentrum Jülich)

Technical Coordinator

Björn Grüning
Björn Grüning
(University of Freiburg)

Training Coordinator

Daniel Wibberg
Daniel Wibberg
(Forschungszentrum Jülich)

Services

Name Type of service
AcivityFinder
Alfred
Aruna
ASA3P
BacDive
Bakta
Berlin RNA Toolbox
BIBIServ
BIIGLE
BiocompR
BioConda & BioContainers
BiocWorkflowTools
Bioinformatics consulting and analysis of proteomics data
biomaRt
BIONDA
BRENDA
Butler
CalibraCurve
CATS - Crop Analysis Tool Suite
CellNetAnalyzer (CNA)
CellNetAnalyzer CNApy
ChrAccR
Circlize
Cloud/HPC
ComplexHeatmaps
Computer-Assisted Structure Elucidation of Metabolites
COPASI
Curare
Data Clinic RDM
Data standardisation and conversion service
DEEP data portal
DELLY
DeSeq2
DexSeq
DIAMetAlyzer
DIAproteomics
DoGSite
Dorothea
e!DAL-PGP
E-CRISP
EBImage
EDGAR
EDIA
EnrichedHeatmaps
Enterotyping
EURISCO
European Galaxy Server
Evolutionary genealogy of genes: Non-supervised Orthologous Groups (eggNOG)
FAIRDOMHub
FLASHDeconv
FLASHIda
FLASHQuant
Freiburg RNA Toolbox
Fusion
Galaxy Image Analysis
Galaxy Training Network
GEAR-Genomics
GenDB
GenDBE
GenExVis
GenomeCRISPR
GenomeRNAi
GeoMine
gtrellis
HELIXER
HilbertCurve
HLA Ligand Atlas
Human Omics Analysis Toolbox
HyPPI
IHW
iPATH
iTOL
JAMDA
KNIME based cellular phenotyping
 of microscope image data
Leipzig – Vienna RNA Package and Toolbox
LifeSoaks
LIFS webportal
LIMIX
LPSN
Machine learning consulting
MaCPepDB
MAGAR
Magellan
MassBank
Mechismo
MeDeCom
MediaDive
MeltDB
Mercator
METALizer
MetaProSIP
MetaProteomeAnalyzer
MetFrag
methview.qc
MGX
MHCquant
Microbiome Analysis Toolbox
MicroMiner
MOFA
NASE
OmniPath
OpenMS
OpenPepXL
OTP
PANGAEA
PATCH
PeptideShaker
PiGx pipelines
Plant Genome Annotation
PlantsDB
Platon
PoseView/Edit
Precog
PROGENy
Protein Array Analyzer (PAA)
Protein Inference Algorithms (PIA)
ProteinsPlus
Protoss
QuPE
ReadXplorer
ReferenceSeeker
rGREAT
rhdf5/Rhdf5lib
RNA Galaxy Workbench
RNA-seq end-to-end workflow
RnBeads 2.0
Roddy
SABIO-RK
SIAMCAT
SIDER
SIENA
SILVA
SILVAngs
slalom
SMART
SSAM
SSAM-lite
STAMPS
Statistical consulting and analysis of proteomics data
StructureProfiler
Toolbox for Large Scale Genomics
TOPP
TOPPView
Training Course Data Stewardship
Training Course RDM
Trimmomatic
TYGS
WarPP
WASP
WESkit
Workflow Plug-Ins
Workflow plug-Ins for NGS processing
YAPSA
Institutes in the German Node (the star marks the lead institute).