Services: Elixir Deposition Databases

Name of service Tag Related links* Key Collection
BioModels

The BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.

EDD
Biosamples

BioSamples stores and supplies descriptions and metadata about biological samples used in research and development by academia and industry. 

EDD
BioStudies

The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI.

EMDB

The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography.

European Genome-phenome Archive (EGA)

The European Genome-phenome Archive (EGA) allows users to explore datasets from numerous genotype experiments, including case-control, population and family studies, that are supplied by a range of data providers. 

EVA

European Variation Archive

EDD
GWAS Catalog

The NHGRI-EBI GWAS Catalog is a quality-controlled, manually curated, literature-derived collection of all published genome-wide association studies.
 

IntAct

IntAct provides a freely available, open source database system and analysis tools for molecular interaction data.

LIPID Maps

Provides access to lipid nomenclature, databases, tools, protocols, standards, tutorials, meetings, publications, and other resources and serving the international lipid research community.

MetaboLights

MetaboLights is a database for metabolomics experiments and derived information. 

EDD
Model Archive

The archive for structural models which are not based on experimental data and complements the PDB archive for experimental structures and PDB- Dev for integrative structures. Any type of macromolecular structure which would otherwise be suitable for the PDB but whose coordinates are not based on experimental data can be deposited in ModelArchive. This includes single chains or complexes consisting of proteins, RNA, DNA, or carbohydrates including small molecules bound to them.

EDD
PRIDE

PRIDE (The Proteomics Identifications Database) is a standards-compliant, public repository for proteomics data. It contains protein and peptide identifications and their associated supporting evidence.

Protein Data Bank in Europe (PDBe)

The Protein Data Bank in Europe (PDBe) is the European part of the wwPDB for the collection, organisation and dissemination of data on biological macromolecular structures.

The European Nucleotide Archive (ENA)

The European Nucleotide Archive (ENA) contains all the nucleotide sequences in the public domain and consolidates data from EMBL-Bank, the European Trace Archive and the Sequence Read Archive.

For information about what ELIXIR Deposition Databases are and how they are selected see the Data Platform pages.