Services: ELIXIR Deposition Databases
For information about what ELIXIR Deposition Databases are and how they are selected see the Data Platform pages.
Name of service | Tag | Related links* | Key collection | |
---|---|---|---|---|
ArrayExpress |
ArrayExpress is a MIAME-standard compliant resource that stores functional genomics experiments performed using RNA-Seq/ChIP-Seq and array-based technologies. |
bio.toolsFAIRsharingTeSS | CDR EDD | |
BioModels |
The BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. |
bio.toolsFAIRsharingTeSS | EDD | |
Biosamples |
BioSamples stores and supplies descriptions and metadata about biological samples used in research and development by academia and industry. |
bio.toolsFAIRsharingTeSS | EDD | |
BioStudies |
The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. |
bio.toolsFAIRsharing | EDD | |
EMDB |
The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. |
bio.toolsFAIRsharing | EDD | |
EVA |
European Variation Archive |
bio.toolsFAIRsharing | EDD | |
IntAct |
IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. |
bio.toolsFAIRsharingTeSS | CDR EDD | |
MetaboLights |
MetaboLights is a database for metabolomics experiments and derived information. |
bio.toolsFAIRsharingTeSS | EDD | |
PRIDE |
PRIDE (The Proteomics Identifications Database) is a standards-compliant, public repository for proteomics data. It contains protein and peptide identifications and their associated supporting evidence. |
bio.toolsFAIRsharingTeSS | CDR EDD | |
Protein Data Bank in Europe (PDBe) |
The Protein Data Bank in Europe (PDBe) is the European part of the wwPDB for the collection, organisation and dissemination of data on biological macromolecular structures. |
bio.toolsFAIRsharingTeSS | CDR EDD | |
The European Genome-phenome Archive (EGA) |
The European Genome-phenome Archive (EGA) allows users to explore datasets from numerous genotype experiments, including case-control, population and family studies, that are supplied by a range of data providers. |
bio.toolsFAIRsharingTeSS | CDR EDD | |
The European Nucleotide Archive (ENA) |
The European Nucleotide Archive (ENA) contains all the nucleotide sequences in the public domain and consolidates data from EMBL-Bank, the European Trace Archive and the Sequence Read Archive. |
bio.toolsFAIRsharingTeSS | CDR EDD |