Services
| Name of service | Tag | ELIXIR Node | Related links* | Key Collection | |
|---|---|---|---|---|---|
| ActivityFinder | ActivityFinder establishes a connection between crystallographic data stored in the PDB database and the activity values stored in the ChEMBL database. |
ELIXIR Germany | TeSS | ||
| ChannelsDB | A comprehensive resource of channels, pores and tunnels found in biomacromolecular structures deposited in the Protein Data Bank. |
ELIXIR Czech Republic | bio.tools | ||
| ChEBI | ChEBI (Chemical Entities of Biological Interest) is a dictionary of small molecular entities. It is manually annotated and provides a chemical ontology to describe small molecules, including their biological and chemical roles. |
EMBL-EBI | bio.toolsFAIRsharingTeSS | CDD | |
| ChEMBL | ChEMBL is a database of bioactive compounds that focuses on interactions between small molecules and their macromolecular targets, including medicinal chemistry, clinical development and therapeutics data. |
EMBL-EBI | bio.toolsFAIRsharingTeSS | CDD | |
| COPASI | OPASI is a software application for simulation and analysis of biochemical networks and their dynamics. |
ELIXIR Germany | bio.toolsTeSS | ||
| IDSM | Integrated Database of Small Molecules. |
ELIXIR Czech Republic | bio.tools | ||
| IUPHAR/BPS Guide to PHARMACOLOGY | A curated database of drug targets, prescription medicines and experimental drugs. |
ELIXIR UK | bio.toolsFAIRsharingTeSS | ||
| MeltDB | Analysis of raw GC- and LC-MS metabolome data against the either the GMD database or user defined libraries in NIST. |
ELIXIR Germany | bio.tools | ||
| MetaboLights | MetaboLights is a database for metabolomics experiments and derived information. |
EMBL-EBI | bio.toolsFAIRsharingTeSS | EDD | |
| Metabolites Biological Role (MBROLE) | Server that performs functional enrichment analysis of a list of chemical compounds derived from a metabolomics experiment, which allows this list to be interpreted in biological terms. |
ELIXIR Spain | bio.tools | ||
| MetaProSIP | Automated inference of elemental fluxes in microbial communities, now integrated as TOPP into OpenMS |
ELIXIR Germany | |||
| OpenMS | OpenMS is an open-source C++ library (+ Python bindings) for LC/MS data management, analysis and visualization. |
ELIXIR Germany | bio.tools | ||
| PanDrugs | PanDrugs is a method to prioritize anticancer drug treatments according to individual genomic data. PanDrugs current version integrates data from 24 primary sources and supports 56297 drug-target associations obtained from 4804 genes and 9092 unique compounds |
ELIXIR Spain | bio.tools | ||
| QuPE | Importing and analysing Mass Spec. data in a range of formats and for protein identification. |
ELIXIR Germany | bio.tools | ||
| SPCI | Structural and physico-chemical interpretation of QSAR models |
ELIXIR Czech Republic | bio.tools | ||
| SwissLipids | A knowledge resource for lipids and their biology. |
ELIXIR Switzerland | bio.toolsFAIRsharingTeSS |