Services

Name of service Tag ELIXIR Node Related links* Key Collection
ActivityFinder

ActivityFinder establishes a connection between crystallographic data stored in the PDB database and the activity values stored in the ChEMBL database.

ELIXIR Germany
ChannelsDB

A comprehensive resource of channels, pores and tunnels found in biomacromolecular structures deposited in the Protein Data Bank.

ELIXIR Czech Republic
ChEBI

ChEBI (Chemical Entities of Biological Interest) is a dictionary of small molecular entities. It is manually annotated and provides a chemical ontology to describe small molecules, including their biological and chemical roles.

EMBL-EBI CDD
ChEMBL

ChEMBL is a database of bioactive compounds that focuses on interactions between small molecules and their macromolecular targets, including medicinal chemistry, clinical development and therapeutics data.

EMBL-EBI CDD
COPASI

OPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

ELIXIR Germany
IDSM

Integrated Database of Small Molecules.
Aggregating many different sources of information about small molecules into a single, logically coherent and semantically interconnected information source.

ELIXIR Czech Republic
IUPHAR/BPS Guide to PHARMACOLOGY

A curated database of drug targets, prescription medicines and experimental drugs.

ELIXIR UK
MeltDB

Analysis of raw GC- and LC-MS metabolome data against the either the GMD database or user defined libraries in NIST.

ELIXIR Germany
MetaboLights

MetaboLights is a database for metabolomics experiments and derived information. 

EMBL-EBI EDD
Metabolites Biological Role (MBROLE)

Server that performs functional enrichment analysis of a list of chemical compounds derived from a metabolomics experiment, which allows this list to be interpreted in biological terms.

ELIXIR Spain
MetaProSIP

Automated inference of elemental fluxes in microbial communities, now integrated as TOPP into OpenMS

ELIXIR Germany
OpenMS

OpenMS is an open-source C++ library (+ Python bindings) for LC/MS data management, analysis and visualization. 

ELIXIR Germany
PanDrugs

PanDrugs is a method to prioritize anticancer drug treatments according to individual genomic data. PanDrugs current version integrates data from 24 primary sources and supports 56297 drug-target associations obtained from 4804 genes and 9092 unique compounds

ELIXIR Spain
QuPE

Importing and analysing Mass Spec. data in a range of formats and for protein identification.
 

ELIXIR Germany
SPCI

Structural and physico-chemical interpretation of QSAR models

ELIXIR Czech Republic
SwissLipids

A knowledge resource for lipids and their biology.

ELIXIR Switzerland