Services: Proteins And Proteomes

SwissDrugDesign provides a collection of web-based tools covering all aspects of computer-aided drug design.

Database of protein association networks representing a broad scala of biological associations between pairs of proteins that go beyond  direct protein interactions

Web tool for the prediction of T-cell receptor epitope recognition.

Transcription factor - target gene interaction and binding site database for multiple species

Contains tools for the functional classification of PLP-dependent enzymes in predicted protein sequences.

Database of membrane localization of transmembrane protein structures estimated by AlphaFold2

A method for estimating the crystallizability of transmembrane proteins

Detection of transmembrane regions using 3D protein structure

Database of experimentally determined topological data of transmembrane proteins

The OpenMS Proteomics Pipeline making a range of tools available, including MetaProSIP and TOPPview. 

Visualising own data through OpenMS tools, including spectra, chromatograms, 2D LC-MS data and annotations. 

Template-based RNA secondary structure visualization.

Database of key transmembrane target proteins

The glycomic MS database and repository.

UniLectin is a platform integrating information regarding non-enzymatic carbohydrate-binding proteins usually referred to as lectins with the prospect of building and refining a structural and functional classification of these proteins. It includes the reference Lectin3D a database of 3D structures curated from the PDB. Interactive resource for the exploration of lectins

Platform for metaproteomics data analysis with a focus on interactive data visualizations

UniProt produces and maintains automatic and manually curated annotation of all publicly available protein sequences and serves these to users through various interfaces. 

Collection of validation results for the entire Protein Data Bank.

A resource for viral genes and families, providing detailed molecular and epidemiological information, along with virion and genome figures. Each virus or family page gives easy access to UniProtKB/Swiss-Prot viral protein entries. 

WarPP is a fully automated procedure to place water molecules in the active site of a protein structure. 

Workflow Execution Service automating a number of steps, including: 

1. Fetch and cache a workflow a number of sources
2. Identify the kind of workflow.
3. Fetch and set up workflow execution engine
4. Identify the needed containers by the workflow
5. Execute the workflow in a secure way