Reference hCNV datasets, use-case workflows and benchmarking

The ELIXIR human Copy Number Variation Community (hCNV) was created in December 2018. In two years contributions to the field have been numerous (ELIXIR IS, Rare Diseases, Federated Human Data, Beacons, GA4GH, EJP-RD and Beyond 1 Million Genomes - B1MG).

The Community now aims to address the major challenge of NGS data interpretation in the era of whole genome sequencing: Copy Number Variation. During the first commissioned service offered as a starting grant, the Community has identified various gaps to proceed with CNV tools benchmarking and in particular for Exome and targeted sequencing, which are by far the most widely used technologies in diagnostic laboratories and in research.

Within this implementation study we want to provide solutions and bioinformatic infrastructure solutions to fill identified gaps, and to make these biomedical reference materials available (i.e. via Open Science) to the various communities and platforms.

Duration: 

1 June 2021 to 31 May 2023

Nodes involved: 

Platform/Community: 

People involved: 

Christophe Beroud
David Salgado
Krzysztof Poterlowicz
Michael Baudis
Salvador Capella-Gutierrez
Sergi Beltran
Björn Grüning