Services: Recommended Interoperability Resources
For information about what Recommended Interoperability Resources (RIRs) are and how they are selected see the Interoperability Platform pages.
Name of service | Tag | Related links* | Key collection | |
---|---|---|---|---|
3DBIONOTES API |
A reusable platform-independent API call component for protein metadata alignment, annotation, and integration across major protein data resources. |
bio.tools | RIR | |
BioImage Informatics Index (BISE) |
BIII Bio Image informatics Index (www.biii.eu) is a knowledge database of software tools, test image databases and training materials for bio image analysis. Software tools are organized as full protocol of analysis (workflow), specific brick (component) to construct a workflow, or software platform or library (collection). They are described using Edam Bio Imaging, which is iteratively defined using this website. All entries are exposed following FAIR principles and accessible for other usage with (ODC-By) v1.0 license. |
bio.tools | RIR | |
BridgeDb |
A framework to map identifiers between various databases. |
bio.toolsFAIRsharingTeSS | RIR | |
DisGeNET API |
An API SPARQL Endpoint for genetic variants (human disease data). |
bio.toolsFAIRsharing | RIR | |
FAIRsharing |
An information and educational resource of inter-related data standards, databases and policies. |
FAIRsharingTeSS | RIR | |
FAIRtracks |
FAIRtracks is a set of JSON Schemas defining a draft minimal standard used to consolidate genomic track metadata from various sources, which can be queried by downstream clients through the TrackFind webtool/API. |
FAIRsharing | RIR | |
g:Profiler |
g:Profiler is a bioinformatics toolkit for characterising and manipulating gene lists of high-throughput genomic data. |
bio.toolsTeSS | RIR | |
GWAS Catalog |
The NHGRI-EBI GWAS Catalog is a quality-controlled, manually curated, literature-derived collection of all published genome-wide association studies. |
bio.toolsFAIRsharingTeSS | RIR | |
Identifiers.org |
Identifiers.org is a system providing resolvable persistent URIs used to identify data for the scientific community, with a current focus on the Life Sciences domain. |
bio.toolsFAIRsharing | RIR | |
InterMine |
A database framework widely used to support model organism databases. |
bio.toolsFAIRsharingTeSS | RIR | |
ISA Tools Commons |
A suite of open source tools and formats to enable standards-compliant collection, curation, management, publication and reuse of experiments. |
bio.tools | RIR | |
MOLGENIS |
A software package to help researchers set up an online database application that supports data queries and allows data sharing. |
bio.tools | RIR | |
Omics Discovery Index (OmicsDI) |
The Omics Discovery Index provides a knowledge discovery framework across heterogeneous omics data (genomics, proteomics, transcriptomics and metabolomics). It indexes metadata from more than 20 omics resources across four continents. |
bio.toolsFAIRsharing | RIR | |
PLAZA |
Plant-oriented online resource for comparative, evolutionary and functional genomics. |
bio.toolsFAIRsharing | RIR | |
The Ontology Lookup Service (OLS) |
The Ontology Lookup Service (OLS) provides a web service interface to query multiple ontologies from a single location with a unified output format. |
bio.toolsTeSS | RIR |