|Name of service||Related links*|
AuReMe, is an adaptable workspace for sustainable reconstructions or improvements of genome-scale metabolic models involving personalized pipelines. It is adapted to the metabolic study of non-conventional organisms and microbiomes to ensure that the process is reproducible and documented regardless of the combination of tools used. Among others, modules included in the AuReMe environment are a model-management PADmet module, a wiki-export module, a gap-filling tool for non-conventional organism (meneco), a tool for the reduction of microbial communities based on metabolic complementarities (miscoto) and a package to handle the analysis of large-scale microbiota (Metage2Metabo).
|BioXSD / GTrack||
The BioXSD / GTrack ecosystem is an infrastructure of generic state-of-the-art data formats for integrative bioinformatics, with focus on genomics and epigenomics, sequence and structure bioinformatics, and other applications.
g:Profiler is a bioinformatics toolkit for characterising and manipulating gene lists of high-throughput genomic data.
|GO annotation (GOA)||
The UniProt GO annotation program (GOA) aims to provide high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB).
A database framework widely used to support model organism databases.
|ISA Tools Commons||
A suite of open source tools and formats to enable standards-compliant collection, curation, management, publication and reuse of experiments.
|Tools for FAIRification||
Diverse tools under development, in use in BYOD events to facilitate making data FAIR using linked data technology.