Service list
Name of service | Description | Related links* |
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Help Desk |
Under Development in collaboration with SURFsara and Lygature, based on prior experience deploying tools for end users / life scientists. |
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HERVd |
Human Endogenous RetroViruses Database. |
bio.toolsFAIRsharing |
HGNC |
HUGO Gene Nomenclature Committee, responsible for approving unique symbols and names for human loci, including protein coding genes, ncRNA genes and pseudogenes, to allow unambiguous scientific communication. |
bio.toolsFAIRsharing |
HilbertCurve |
HilbertCurve is an R package which generates 2D Hilbert curves for genomic and other data |
bio.tools |
Hipathia suite |
A web tool for the interpretation of the consequences of the combined changes of gene expression levels and/or genomic mutations in the context of signalling pathways. |
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HLA Ligand Atlas |
The HLA Ligand Atlas is a comprehensive collection of tissue and HLA allele specific HLA ligands that are naturally presented. The data was generated in standardized mass spectrometry experiments and analyzed using our reproducible computational analysis workflow. (Data analysed with the OpenMS MHCquant workflow) |
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HmtDB |
Database of human mitochondrial genomes from primary INSDC databases, personal submissions and application of MtoolBox to NGS data. |
bio.toolsFAIRsharing |
HotSpot Wizard |
Web server for identification of hot spots in protein engineering. |
bio.tools |
HPC PlatformsCompute Services |
Tier-0 HPC system Marconi and Tier-1 Galileo100 INFN HPC clusters ENEA CRESCO "HPC service” |
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HPC@Cineca |
Fast-track HPC access for medium sized biological data analysis projects (50K core hours). |
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Human Omics Analysis Toolbox |
A collection of web resources for working with proteins, drug reactions, gene expression analysis, proteome profiling and assessing MinION Data, including:
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Human Protein Atlas (HPA) |
Database with millions of high-resolution images. |
bio.toolsFAIRsharing |
Hungarian Cancer Registry |
A population-based database that collects all the cases with malignancies in Hungary by reports of oncology care hospitals. Registration is mandatory. The Registry is regulated by the order of the Hungarian Government and maintained by the National Institute of Oncology. |
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I-Mutant 2.0 |
Predicts protein stability changes upon single point mutation from protein structure or protein sequence. |
bio.tools |
Identifiers.org |
Identifiers.org is a system providing resolvable persistent URIs used to identify data for the scientific community, with a current focus on the Life Sciences domain. |
bio.toolsFAIRsharing |
IDP ontology |
An ontology for IDP community: it enables the annotation of structural and functional properties of intrinsically disordered proteins and their interaction partners. |
bio.tools |
IDSM |
Integrated Database of Small Molecules. |
bio.tools |
IHW |
Independent hypothesis weighting (IHW) is a multiple testing procedure that increases power compared to commonly used alternatives for false discovery rate (FDR) control by assigning data-driven weights to each hypothesis. The IHW software package provide a mechanism that allows the methodology to be applied to many different data types. |
bio.tools |
IMGT |
An integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), and major histocompatibility (MH) of human and other vertebrate species. |
bio.toolsFAIRsharing |
INB Integrated platform for macromolecular flexibility (FlexPortal) |
Web tool to study the flexibility of nucleic acids, either isolated or bound to other molecules. The server offers a variety of methods to explore nucleic acid flexibility, from coarse-grained low resolution mesoscopic models to atomistic molecular dynamics simulations. |
bio.tools |
INGA |
Interaction Network GO Annotator is a web server for the prediction of protein function. |
bio.tools |
INPS-MD |
Prediction of protein stability change upon single-point variations from protein sequence and structure |
bio.tools |
IntAct |
IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. |
bio.toolsFAIRsharingTeSS |
IntEnz |
IntEnz is a database of enzyme nomenclature that also provides enzyme classifications based on the nature of catalysed reactions. IntEnz is produced in collaboration with the SIB Swiss Institute of Bioinformatics. |
bio.toolsFAIRsharing |
Interactive Onco Genomics (IntOGen) |
IntOGen collects and analyses somatic mutations in thousands of tumor genomes to identify cancer driver genes. |
bio.tools |
Interactome3D |
A web service for the structural annotation of protein-protein interaction networks. |
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InterMine |
A database framework widely used to support model organism databases. |
bio.toolsFAIRsharingTeSS |
InterPro |
InterPro classifies proteins into families and predicts the presence of important domains and sites. |
bio.toolsFAIRsharingTeSS |
iPATH |
iPath is a web-based tool for the visualization and analysis of cellular pathways. Based on current annotations (such as KEGG), it provides pathway maps for primary cellular metabolism as well as for some additional secondary metabolite synthesis and regulatory pathways. Users can map their own data onto these pathway maps. Due to its navigation and customization functions, iPATH thus allows users to easily explore and analyze the functional and metabolic capabilities of their (meta-)genomic data sets. Part of the Microbiome Analysis Toolbox. |
bio.tools |
iPtgxDBs |
Integrated Proteogenomics DataBases an open source database that provides integrated annotations, predictions and a six-frame translation for one respective genome sequence in an easily usable format, both as a search DB (FASTA format) with informative identifiers and a GFF file that integrates all annotations and identifiers. |