Service list
Name of service | Description | Related links* |
---|---|---|
3DBIONOTES API |
A reusable platform-independent API call component for protein metadata alignment, annotation, and integration across major protein data resources. |
bio.tools |
AAI - REMS |
CSC develops and hosts an open source tool REMS to assist a DAC to manage Data Access Applications and access rights to sensitive datasets. REMS is a key component in ELIXIR AAI. |
TeSS |
ACT |
Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. |
bio.tools |
AMYL-PRED 2 |
A Consensus Method for Amyloid Propensity Prediction |
bio.tools |
ANASTASIA |
ANASTASIA (Automated Nucleotide Animoacid Sequences Translational plAtform for Synthetic Interpretation and Analysis) is a metagenomics analysis platform and repository. |
bio.tools |
ANISEED |
ANISEED is the main model organism database for the worldwide community of scientists working on a class of marine invertebrates, the tunicates (sister-group of vertebrates). It integrates for each species: a main knowledge base with extended information on gene function, gene expression, phylogeny and embryonic anatomy at single cell resolution; a genomic browser and a Genomicus gene synteny browser. |
bio.toolsFAIRsharing |
Argot |
Annotation Retrieval of Gene Ontology Terms using semantic similarity in Gene Ontology. |
bio.tools |
ARIA |
ARIA (Ambiguous Restraints for Iterative Assignment) is a software for automated NOE assignment and NMR structure calculation. It speeds up and automatizes the assignment process through the use of an iterative structure calculation scheme. |
bio.tools |
ArrayExpress |
ArrayExpress is a MIAME-standard compliant resource that stores functional genomics experiments performed using RNA-Seq/ChIP-Seq and array-based technologies. |
bio.toolsFAIRsharingTeSS |
arrayMap |
arrayMap is a reference database and bioinformatics resource targeting copy number profiling data in human cancer. The database provides an entry point for meta-analysis and data integration of high-resolution oncogenomic CNA data. |
bio.toolsFAIRsharing |
ASA3P |
Automated high-throughput assembly, annotation and feature analysis of microbial genome cohorts |
bio.tools |
AspicDB |
Alternative splicing database of human genes and functional annotation of their isoforms using the ASPic algorithm. |
bio.tools |
Atomic Charge Calculator |
Atomic Charge Calculator - web application using the Electronegativity Equalization Method. |
bio.tools |
AuReMe |
AuReMe, is an adaptable workspace for sustainable reconstructions or improvements of genome-scale metabolic models involving personalized pipelines. It is adapted to the metabolic study of non-conventional organisms and microbiomes to ensure that the process is reproducible and documented regardless of the combination of tools used. Among others, modules included in the AuReMe environment are a model-management PADmet module, a wiki-export module, a gap-filling tool for non-conventional organism (meneco), a tool for the reduction of microbial communities based on metabolic complementarities (miscoto) and a package to handle the analysis of large-scale microbiota (Metage2Metabo). |
bio.tools |
Authentication and Authorization Infrastructure (AAI) |
The ELIXIR AAI (Authentication and Authorisation Infrastructure) is the ELIXIR service portfolio for authenticating users and helping relying services to manage users' access rights in the services. |
TeSS |
BacDive |
BacDive represents a collection of organism-linked information covering the multifarious aspects of bacterial and archaeal biodiversity. The content encloses information on taxonomy, morphology, physiology, sampling and environmental conditions as well as molecular biology. |
bio.tools |
BaCelLo |
Predicts the subcellular localization of proteins in eukaryotes. |
bio.tools |
BEGDB |
Benchmark Energy and geometry DataBase is available through web interface with integrated analytical tools. |
bio.toolsFAIRsharing |
Berlin RNA Toolbox |
Online access to tools and databases related to miRNAs binding site predictions, RNA Binding protein binding sites, circular RNAs, CLIP data analysis and transcriptome analysis |
|
Bgee |
Database to retrieve and compare gene expression patterns between animal species. |
bio.toolsFAIRsharing |
bio.tools |
Web portal for tools registry and discovery, incorporating tool benchmarking and service monitoring information and the use of EDAM for precise scientific tool description. |
bio.tools |
Bio2Byte SARS-CoV-2 |
Website providing sequence-based predictions to grasp the behaviour of proteins that compose the SARS-CoV-2 virus |
|
BioConda |
Build, test and convert Cloud and HPC software into Linux containers. |
bio.tools |
BioImage Informatics Index (BISE) |
BIII Bio Image informatics Index (www.biii.eu) is a knowledge database of software tools, test image databases and training materials for bio image analysis. Software tools are organized as full protocol of analysis (workflow), specific brick (component) to construct a workflow, or software platform or library (collection). They are described using Edam Bio Imaging, which is iteratively defined using this website. All entries are exposed following FAIR principles and accessible for other usage with (ODC-By) v1.0 license. |
bio.tools |
BioMedIT Network |
The BioMedIT Network establishes a coordinated nationwide network of secure infrastructures to support computational biomedical research and clinical bioinformatics. Built on the centers of expertise established at partner universities (regional nodes), this network is managed by the Personalized Health Informatics Group, a group of the SIB Swiss Institute for Bioinformatics. |
|
BioModels |
The BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. |
bio.toolsFAIRsharingTeSS |
BIONDA |
A biomarker database provides structured information on all biomarker candidates published in PubMed articles. |
bio.tools |
Biosamples |
BioSamples stores and supplies descriptions and metadata about biological samples used in research and development by academia and industry. |
bio.toolsFAIRsharingTeSS |
Bioschemas |
A tailored extension of Schema.org specifically for the Life Science domain, supported by collaborative communities. |
FAIRsharingTeSS |
BioStudies |
The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. |
bio.toolsFAIRsharing |