Service list

APICURON is a database to credit and acknowledge the work of biocurators. It collects and aggregates biocuration events from third party resources generating achievements and leaderboards.

Annotation Retrieval of Gene Ontology Terms using semantic similarity in Gene Ontology.

A customised Galaxy instance for the genomic characterisation of microoganisms in particular and data intensive biomedical research in general.

Alternative splicing database of human genes and functional annotation of their isoforms using the ASPic algorithm.

Predicts the subcellular localization of proteins in eukaryotes.

A web server integrating multiple tools for prediction of protein subcellular localization and topological features

• Cineca Cloud farm
• Cloud@ReCaS-Bari
• Cloud Veneto
• CRS4 Orione Cloud farm
• GARR Cloud

A server for calculating contact maps of X-ray, NMR and predicted structures.

Web based portal of organism-specific cross-platform expression compendia of bacterial organisms and grapevine

Aligns contigs from a draft genome to a closely related genome, and resolves their relative orientation based on this alignment.

Galaxy server allowing to align complete assemblies of SARS-CoV-2 genomes with the reference genomic sequence to obtain a list of polymorphic positions and to annotate genetic variants.

Prediction of protein sub-mitochondrial localization.

Prediction of secretory signal peptides and cleavage sites in proteins.

A manually curated community resource annotating proteins for experimentally determined regions of intrinsic disorder from the literature.

Dissemination events: 

• Seminars / Webinars 
• Workshops
• Events for high-schools

Data, Otimization, Model and Evaluation: Recommendations for supervised machine learning validation in biology.

Efficient detection of protein disorder: web server and tool for protein region detection which are thought to contain no structural content.

A visualization tool for positional annotations on a sequence

A database of structural features for three galactose metabolism enzymes (GALT, GALK, GALE).

An optimized pipeline of MuTect and GATK tools to improve the detection of somatic single nucleotide polymorphisms in whole-exome sequencing data.

Performs haplotype assembly from long gapless reads.

Database of human mitochondrial genomes from primary INSDC databases, personal submissions and application of MtoolBox to NGS data.

Tier-0 HPC system Marconi and Tier-1 Galileo100 INFN HPC clusters ENEA CRESCO "HPC service”

Fast-track HPC access for medium sized biological data analysis projects (50K core hours).

Predicts protein stability changes upon single point mutation from protein structure or protein sequence.

An ontology for IDP community: it enables the annotation of structural and functional properties of intrinsically disordered proteins and their interaction partners.

Interaction Network GO Annotator is a web server for the prediction of protein function.

Prediction of protein stability change upon single-point variations from protein sequence and structure

The Italian COVID-19 Data Portal provides information, guidelines, tools and services to support researchers in creating and sharing research data on COVID-19.

ITSoneDB is a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences.