Workshops and courses

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Data Manipulation and Visualisation with Python

One of the strengths of the Python language is the availability of mature, high-quality libraries for working with scientific data. Integration between the most popular libraries has lead to the concept of a "scientific Python stack": a collection of packages which are designed to work well together. In this workshop we will see how to leverage these libraries to efficiently work with and visualise large volumes of data.

EMBL-EBI: Network Analysis with Cytoscape and PSICQUIC

This workshop will guide novice users through the process of analysing interaction networks – that allow biologists to map and characterise signalling pathways and to predict the function of unknown proteins. It will use practical examples in the popular open-source tool Cytoscape and the PSICQUIC client to access several protein interaction repositories at the same time to integrate protein data from different sources. Data from external sources will then be incorporated using different Cytoscape apps to perform clustering and GO enrichment analysis over our newly created networks.

EMBL-EBI: Interactions & Pathways - Reactome

This workshop will give an introduction to the [Reactome](http://www.reactome.org) pathway database website and analysis tools, using short presentations and practical hands-on exercises. The session will also explain where to learn more, get help, and how to become involved in adding more pathway information to Reactome. Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below.

EMBL-EBI: Interactions & Pathways - IntAct & Complex Portal

This workshop will give an introduction to the protein interaction database [IntAct](http://www.ebi.ac.uk/intact) and the [Complex Portal](http://www.ebi.ac.uk/intact/complex/) service. You will also briefly learn how to visualise protein interactions using the Cytoscape application. Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below.

Introduction to using the Ensembl Genome Browser

The [Ensembl Project](http://www.ensembl.org) provides a comprehensive and integrated source of annotation of, mainly vertebrate, genome sequences. This workshop offers a comprehensive practical introduction to the use of the Ensembl genome browser as well as essential background information. This course will focus on the vertebrate genomes in Ensembl, however much of what will be covered is also applicable to the non-vertebrates (plants, bacteria, fungi, metazoa and protists) in Ensembl Genomes.

EMBL-EBI: Introduction to Interpro

This workshop will give an introduction to the protein sequence analysis & classification database [Interpro](https://www.ebi.ac.uk/interpro/). Interpro is a bioinformatics resource that provides functional analysis of protein sequences by classifying them into families and predicting the presence of domains and important sites. To classify proteins in this way, InterPro uses predictive models, known as signatures, provided by several different databases (referred to as member databases) that make up the InterPro Consortium.

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