Implementation Studies

Implementation Studies are short technical projects that guide future service development, drive standards adoption and connect ELIXIR Nodes (see Who we are).

They are funded through the budget of the ELIXIR Hub and form part of our ongoing activities in a particular Platform or Community. They are proposed by Platforms, agreed with the ELIXIR Heads of Nodes committee and approved by the ELIXIR Board.

Name of study Platform/Community Nodes involved
A Scalable approach to Personal FAIR Data Management and Analysis Human Data, Compute, Interoperability, Galaxy ELIXIR Netherlands, ELIXIR Italy, EMBL-EBI
Annotation and curation of human genomic variations (2018-Variations) Human Data, Compute, Data, Interoperability ELIXIR Finland, EMBL-EBI, ELIXIR Switzerland, ELIXIR UK, ELIXIR Norway, ELIXIR Italy
Apple as a Model for Genomic Information Exchange Data, Plant Sciences ELIXIR Italy, ELIXIR Belgium , EMBL-EBI
Beacon (2019-21) Human Data ELIXIR Switzerland, EMBL-EBI, ELIXIR Spain, ELIXIR Finland, ELIXIR Luxembourg, ELIXIR Sweden
Capacity Building Interoperability ELIXIR UK, ELIXIR Norway, ELIXIR Portugal, ELIXIR Italy, ELIXIR Sweden, ELIXIR Netherlands, ELIXIR Estonia, ELIXIR Finland, ELIXIR Belgium , ELIXIR France, ELIXIR Czech Republic
Comparison, benchmarking and dissemination of proteomics data analysis pipelines Tools, Data, Compute, Proteomics, Metabolomics ELIXIR Denmark, EMBL-EBI, ELIXIR Netherlands, ELIXIR Spain, ELIXIR France, ELIXIR Sweden, ELIXIR Italy, ELIXIR Czech Republic, ELIXIR Germany
Container Orchestration Compute EMBL-EBI, ELIXIR Finland, ELIXIR Switzerland, ELIXIR Luxembourg, ELIXIR Czech Republic, ELIXIR Italy, ELIXIR UK, ELIXIR Sweden, ELIXIR Germany, ELIXIR Belgium , ELIXIR France, ELIXIR Denmark, ELIXIR Netherlands, ELIXIR Norway, ELIXIR Portugal, ELIXIR Slovenia
Crowd-sourcing the annotation of public proteomics datasets to improve data reusability Proteomics EMBL-EBI, ELIXIR Belgium , ELIXIR Germany, ELIXIR Netherlands, ELIXIR Denmark, ELIXIR Switzerland, ELIXIR France, ELIXIR Sweden, ELIXIR Spain, ELIXIR Norway
Data Integration for Compute Compute EMBL-EBI, ELIXIR Italy, ELIXIR Netherlands, ELIXIR Finland, ELIXIR Switzerland, ELIXIR France, ELIXIR Sweden, ELIXIR Germany, ELIXIR Belgium , ELIXIR Luxembourg, ELIXIR Norway, ELIXIR Portugal
Data Validation Interoperability, Tools, Human Data, Plant Sciences, Galaxy, Metabolomics, Marine Metagenomics ELIXIR Belgium , ELIXIR France, EMBL-EBI, ELIXIR UK
Deploying Reproducible Containers and Workflows Across Cloud Environments Compute, Tools EMBL-EBI, ELIXIR Spain, ELIXIR Germany, ELIXIR Finland, ELIXIR France, ELIXIR Denmark, ELIXIR Belgium , ELIXIR Sweden, ELIXIR Italy, ELIXIR Switzerland, ELIXIR UK, ELIXIR Netherlands
Developing learning paths for users of ELIXIR services Training, Industry ELIXIR UK, EMBL-EBI, ELIXIR Netherlands, ELIXIR France, ELIXIR Luxembourg, ELIXIR Estonia, ELIXIR Switzerland, ELIXIR Italy, ELIXIR Finland, ELIXIR Belgium
ELIXIR Federated Human Data (2019-21) Human Data ELIXIR Finland, EMBL-EBI, ELIXIR Spain, ELIXIR Switzerland, ELIXIR Netherlands, ELIXIR Sweden, ELIXIR Luxembourg, ELIXIR Norway, ELIXIR Czech Republic, ELIXIR Portugal, ELIXIR Estonia, ELIXIR Belgium , ELIXIR Slovenia
ELIXIR Hybrid Cloud Compute ELIXIR Germany, ELIXIR Czech Republic, ELIXIR Netherlands, ELIXIR Spain, ELIXIR Italy, ELIXIR Finland, EMBL-EBI, ELIXIR UK, ELIXIR Luxembourg, ELIXIR Slovenia
Enabling the reuse, extension, scaling, and reproducibility of scientific workflows (2018-cwl) Interoperability, Compute, Tools, Training, Galaxy ELIXIR France, ELIXIR UK, EMBL-EBI, ELIXIR Finland
Expanding the Galaxy: meeting (the needs of) ELIXIR Communities Galaxy ELIXIR Spain, ELIXIR Portugal, ELIXIR Germany, ELIXIR France, ELIXIR Netherlands, EMBL-EBI, ELIXIR UK, ELIXIR Belgium , ELIXIR Greece, ELIXIR Norway, ELIXIR Czech Republic
Extending open proteomics data analysis pipelines in the cloud: Additional tools and focus on scalability, supporting the dramatic growth of public proteomics data Data, Compute, Tools, Proteomics ELIXIR Belgium , EMBL-EBI, ELIXIR Germany, ELIXIR France, ELIXIR Spain
FAIR Service Architecture Interoperability ELIXIR UK, EMBL-EBI, ELIXIR Netherlands, ELIXIR Norway, ELIXIR Sweden, ELIXIR Italy, ELIXIR Germany
First h-CNV Community Implementation Study Human Data, Industry, Interoperability ELIXIR France, ELIXIR Switzerland, ELIXIR Germany, EMBL-EBI, ELIXIR Spain, ELIXIR Netherlands, ELIXIR Norway, ELIXIR Hungary, ELIXIR Slovenia, ELIXIR UK
FONDUE - FAIR-ification of Plant Genotyping Data and its linking to Phenotyping using ELIXIR Platforms Plant Sciences, Data, Interoperability ELIXIR France, ELIXIR Germany, ELIXIR Belgium , ELIXIR Netherlands, EMBL-EBI
Galaxy Community Implementation Study Galaxy ELIXIR Belgium , ELIXIR France, ELIXIR Germany, ELIXIR Norway, ELIXIR Italy, ELIXIR Czech Republic, ELIXIR Netherlands, ELIXIR Spain, ELIXIR UK, ELIXIR Switzerland, ELIXIR Slovenia
Gap analysis, training materials development and training delivery Training ELIXIR Greece, ELIXIR Slovenia, ELIXIR Sweden, ELIXIR Netherlands, ELIXIR Italy, ELIXIR Hungary, ELIXIR Portugal, ELIXIR Norway, ELIXIR Luxembourg, ELIXIR France
Identity and Access Management Compute ELIXIR Norway, ELIXIR Czech Republic, ELIXIR Italy, ELIXIR Finland, ELIXIR Netherlands, ELIXIR Luxembourg, ELIXIR Germany
Increasing Interoperability between ELIXIR Protein Structure and Sequence Resources and Expanding these Resources with 3D-Models of CATH Domains, built by SWISS-MODEL Data, Interoperability, Human Data ELIXIR UK, ELIXIR Switzerland, EMBL-EBI
Interoperability Services for the Cloud Interoperability EMBL-EBI, ELIXIR Norway, ELIXIR Belgium
Interoperability with a Purpose Interoperability ELIXIR Netherlands, ELIXIR Belgium , ELIXIR Norway, EMBL-EBI, ELIXIR Spain, ELIXIR Italy, ELIXIR Portugal, ELIXIR UK, ELIXIR France, ELIXIR Czech Republic
Literature-Data Integration Data EMBL-EBI, ELIXIR Italy, ELIXIR Czech Republic, ELIXIR France, ELIXIR UK, ELIXIR Spain, ELIXIR Sweden, ELIXIR Germany, ELIXIR Switzerland
Long Term Sustainability Data ELIXIR Switzerland, EMBL-EBI, ELIXIR Norway
Mapping the landscape of Biocuration in ELIXIR: Practice, capability and training requirements Training, Data, Interoperability ELIXIR UK, ELIXIR Switzerland, EMBL-EBI, ELIXIR Luxembourg, ELIXIR Slovenia
Metabolite Identification (2018-Metabolomics) Metabolomics, Data, Interoperability, Tools ELIXIR Netherlands, EMBL-EBI, ELIXIR France, ELIXIR UK, ELIXIR Germany, ELIXIR Spain, ELIXIR Sweden, ELIXIR Italy, ELIXIR Estonia, ELIXIR Switzerland, ELIXIR Belgium

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